tf.compat.v1.estimator.experimental.KMeans

An Estimator for K-Means clustering.

Inherits From: Estimator

tf.compat.v1.estimator.experimental.KMeans(
    num_clusters, model_dir=None, initial_clusters=RANDOM_INIT,
    distance_metric=SQUARED_EUCLIDEAN_DISTANCE, seed=None, use_mini_batch=True,
    mini_batch_steps_per_iteration=1, kmeans_plus_plus_num_retries=2,
    relative_tolerance=None, config=None, feature_columns=None
)

Example:

import numpy as np
import tensorflow as tf

num_points = 100
dimensions = 2
points = np.random.uniform(0, 1000, [num_points, dimensions])

def input_fn():
  return tf.compat.v1.train.limit_epochs(
      tf.convert_to_tensor(points, dtype=tf.float32), num_epochs=1)

num_clusters = 5
kmeans = tf.compat.v1.estimator.experimental.KMeans(
    num_clusters=num_clusters, use_mini_batch=False)

# train
num_iterations = 10
previous_centers = None
for _ in xrange(num_iterations):
  kmeans.train(input_fn)
  cluster_centers = kmeans.cluster_centers()
  if previous_centers is not None:
    print 'delta:', cluster_centers - previous_centers
  previous_centers = cluster_centers
  print 'score:', kmeans.score(input_fn)
print 'cluster centers:', cluster_centers

# map the input points to their clusters
cluster_indices = list(kmeans.predict_cluster_index(input_fn))
for i, point in enumerate(points):
  cluster_index = cluster_indices[i]
  center = cluster_centers[cluster_index]
  print 'point:', point, 'is in cluster', cluster_index, 'centered at', center

The SavedModel saved by the export_saved_model method does not include the cluster centers. However, the cluster centers may be retrieved by the latest checkpoint saved during training. Specifically,

kmeans.cluster_centers()

is equivalent to

tf.train.load_variable(
    kmeans.model_dir, KMeansClustering.CLUSTER_CENTERS_VAR_NAME)

Args
`num_clusters`	An integer tensor specifying the number of clusters. This argument is ignored if `initial_clusters` is a tensor or numpy array.
`model_dir`	The directory to save the model results and log files.
`initial_clusters`	Specifies how the initial cluster centers are chosen. One of the following: * a tensor or numpy array with the initial cluster centers. * a callable `f(inputs, k)` that selects and returns up to `k` centers from an input batch. `f` is free to return any number of centers from `0` to `k`. It will be invoked on successive input batches as necessary until all `num_clusters` centers are chosen. `KMeansClustering.RANDOM_INIT`: Choose centers randomly from an input batch. If the batch size is less than `num_clusters` then the entire batch is chosen to be initial cluster centers and the remaining centers are chosen from successive input batches. `KMeansClustering.KMEANS_PLUS_PLUS_INIT`: Use kmeans++ to choose centers from the first input batch. If the batch size is less than `num_clusters`, a TensorFlow runtime error occurs.
`distance_metric`	The distance metric used for clustering. One of: `KMeansClustering.SQUARED_EUCLIDEAN_DISTANCE`: Euclidean distance between vectors `u` and `v` is defined as \(\|\|u - v\|\|_2\) which is the square root of the sum of the absolute squares of the elements' difference. `KMeansClustering.COSINE_DISTANCE`: Cosine distance between vectors `u` and `v` is defined as \(1 - (u . v) / (\|\|u\|\|_2 \|\|v\|\|_2)\).
`seed`	Python integer. Seed for PRNG used to initialize centers.
`use_mini_batch`	A boolean specifying whether to use the mini-batch k-means algorithm. See explanation above.
`mini_batch_steps_per_iteration`	The number of steps after which the updated cluster centers are synced back to a master copy. Used only if `use_mini_batch=True`. See explanation above.
`kmeans_plus_plus_num_retries`	For each point that is sampled during kmeans++ initialization, this parameter specifies the number of additional points to draw from the current distribution before selecting the best. If a negative value is specified, a heuristic is used to sample `O(log(num_to_sample))` additional points. Used only if `initial_clusters=KMeansClustering.KMEANS_PLUS_PLUS_INIT`.
`relative_tolerance`	A relative tolerance of change in the loss between iterations. Stops learning if the loss changes less than this amount. This may not work correctly if `use_mini_batch=True`.
`config`	See `tf.estimator.Estimator`.
`feature_columns`	An optionable iterable containing all the feature columns used by the model. All items in the set should be feature column instances that can be passed to `tf.feature_column.input_layer`. If this is None, all features will be used.

Raises
`ValueError`	An invalid argument was passed to `initial_clusters` or `distance_metric`.

Attributes
`config`
`model_dir`
`model_fn`	Returns the `model_fn` which is bound to `self.params`.
`params`

Methods

`cluster_centers`

View source

cluster_centers()

Returns the cluster centers.

`eval_dir`

View source

eval_dir(
    name=None
)

Shows the directory name where evaluation metrics are dumped.

Args
`name`	Name of the evaluation if user needs to run multiple evaluations on different data sets, such as on training data vs test data. Metrics for different evaluations are saved in separate folders, and appear separately in tensorboard.

Returns
A string which is the path of directory contains evaluation metrics.

`evaluate`

View source

evaluate(
    input_fn, steps=None, hooks=None, checkpoint_path=None, name=None
)

Evaluates the model given evaluation data input_fn.

For each step, calls input_fn, which returns one batch of data. Evaluates until:

steps batches are processed, or
input_fn raises an end-of-input exception (tf.errors.OutOfRangeError or StopIteration).

Args
`input_fn`	A function that constructs the input data for evaluation. See Premade Estimators for more information. The function should construct and return one of the following: * A `tf.data.Dataset` object: Outputs of `Dataset` object must be a tuple `(features, labels)` with same constraints as below. * A tuple `(features, labels)`: Where `features` is a `tf.Tensor` or a dictionary of string feature name to `Tensor` and `labels` is a `Tensor` or a dictionary of string label name to `Tensor`. Both `features` and `labels` are consumed by `model_fn`. They should satisfy the expectation of `model_fn` from inputs.
`steps`	Number of steps for which to evaluate model. If `None`, evaluates until `input_fn` raises an end-of-input exception.
`hooks`	List of `tf.train.SessionRunHook` subclass instances. Used for callbacks inside the evaluation call.
`checkpoint_path`	Path of a specific checkpoint to evaluate. If `None`, the latest checkpoint in `model_dir` is used. If there are no checkpoints in `model_dir`, evaluation is run with newly initialized `Variables` instead of ones restored from checkpoint.
`name`	Name of the evaluation if user needs to run multiple evaluations on different data sets, such as on training data vs test data. Metrics for different evaluations are saved in separate folders, and appear separately in tensorboard.

Returns

Returns
A dict containing the evaluation metrics specified in `model_fn` keyed by name, as well as an entry `global_step` which contains the value of the global step for which this evaluation was performed. For canned estimators, the dict contains the `loss` (mean loss per mini-batch) and the `average_loss` (mean loss per sample). Canned classifiers also return the `accuracy`. Canned regressors also return the `label/mean` and the `prediction/mean`.

A dict containing the evaluation metrics specified in model_fn keyed by name, as well as an entry global_step which contains the value of the global step for which this evaluation was performed. For canned estimators, the dict contains the loss (mean loss per mini-batch) and the average_loss (mean loss per sample). Canned classifiers also return the accuracy. Canned regressors also return the label/mean and the prediction/mean.

Raises
`ValueError`	If `steps <= 0`.

`experimental_export_all_saved_models`

View source

experimental_export_all_saved_models(
    export_dir_base, input_receiver_fn_map, assets_extra=None, as_text=False,
    checkpoint_path=None
)

Exports a SavedModel with tf.MetaGraphDefs for each requested mode.

For each mode passed in via the input_receiver_fn_map, this method builds a new graph by calling the input_receiver_fn to obtain feature and label Tensors. Next, this method calls the Estimator's model_fn in the passed mode to generate the model graph based on those features and labels, and restores the given checkpoint (or, lacking that, the most recent checkpoint) into the graph. Only one of the modes is used for saving variables to the SavedModel (order of preference: tf.estimator.ModeKeys.TRAIN, tf.estimator.ModeKeys.EVAL, then tf.estimator.ModeKeys.PREDICT), such that up to three tf.MetaGraphDefs are saved with a single set of variables in a single SavedModel directory.

For the variables and tf.MetaGraphDefs, a timestamped export directory below export_dir_base, and writes a SavedModel into it containing the tf.MetaGraphDef for the given mode and its associated signatures.

For prediction, the exported MetaGraphDef will provide one SignatureDef for each element of the export_outputs dict returned from the model_fn, named using the same keys. One of these keys is always tf.saved_model.signature_constants.DEFAULT_SERVING_SIGNATURE_DEF_KEY, indicating which signature will be served when a serving request does not specify one. For each signature, the outputs are provided by the corresponding tf.estimator.export.ExportOutputs, and the inputs are always the input receivers provided by the serving_input_receiver_fn.

For training and evaluation, the train_op is stored in an extra collection, and loss, metrics, and predictions are included in a SignatureDef for the mode in question.

Extra assets may be written into the SavedModel via the assets_extra argument. This should be a dict, where each key gives a destination path (including the filename) relative to the assets.extra directory. The corresponding value gives the full path of the source file to be copied. For example, the simple case of copying a single file without renaming it is specified as {'my_asset_file.txt': '/path/to/my_asset_file.txt'}.

Args
`export_dir_base`	A string containing a directory in which to create timestamped subdirectories containing exported `SavedModel`s.
`input_receiver_fn_map`	dict of `tf.estimator.ModeKeys` to `input_receiver_fn` mappings, where the `input_receiver_fn` is a function that takes no arguments and returns the appropriate subclass of `InputReceiver`.
`assets_extra`	A dict specifying how to populate the assets.extra directory within the exported `SavedModel`, or `None` if no extra assets are needed.
`as_text`	whether to write the `SavedModel` proto in text format.
`checkpoint_path`	The checkpoint path to export. If `None` (the default), the most recent checkpoint found within the model directory is chosen.

Returns
The path to the exported directory as a bytes object.

Raises
`ValueError`	if any `input_receiver_fn` is `None`, no `export_outputs` are provided, or no checkpoint can be found.

`export_saved_model`

View source

export_saved_model(
    export_dir_base, serving_input_receiver_fn, assets_extra=None, as_text=False,
    checkpoint_path=None, experimental_mode=ModeKeys.PREDICT
)

Exports inference graph as a SavedModel into the given dir.

For a detailed guide, see Using SavedModel with Estimators.

This method builds a new graph by first calling the serving_input_receiver_fn to obtain feature Tensors, and then calling this Estimator's model_fn to generate the model graph based on those features. It restores the given checkpoint (or, lacking that, the most recent checkpoint) into this graph in a fresh session. Finally it creates a timestamped export directory below the given export_dir_base, and writes a SavedModel into it containing a single tf.MetaGraphDef saved from this session.

The exported MetaGraphDef will provide one SignatureDef for each element of the export_outputs dict returned from the model_fn, named using the same keys. One of these keys is always tf.saved_model.signature_constants.DEFAULT_SERVING_SIGNATURE_DEF_KEY, indicating which signature will be served when a serving request does not specify one. For each signature, the outputs are provided by the corresponding tf.estimator.export.ExportOutputs, and the inputs are always the input receivers provided by the serving_input_receiver_fn.

The experimental_mode parameter can be used to export a single train/eval/predict graph as a SavedModel. See experimental_export_all_saved_models for full docs.

Args
`export_dir_base`	A string containing a directory in which to create timestamped subdirectories containing exported `SavedModel`s.
`serving_input_receiver_fn`	A function that takes no argument and returns a `tf.estimator.export.ServingInputReceiver` or `tf.estimator.export.TensorServingInputReceiver`.
`assets_extra`	A dict specifying how to populate the assets.extra directory within the exported `SavedModel`, or `None` if no extra assets are needed.
`as_text`	whether to write the `SavedModel` proto in text format.
`checkpoint_path`	The checkpoint path to export. If `None` (the default), the most recent checkpoint found within the model directory is chosen.
`experimental_mode`	`tf.estimator.ModeKeys` value indicating with mode will be exported. Note that this feature is experimental.

Returns
The path to the exported directory as a bytes object.

Raises
`ValueError`	if no `serving_input_receiver_fn` is provided, no `export_outputs` are provided, or no checkpoint can be found.

`export_savedmodel`

View source

export_savedmodel(
    export_dir_base, serving_input_receiver_fn, assets_extra=None, as_text=False,
    checkpoint_path=None, strip_default_attrs=False
)

Exports inference graph as a SavedModel into the given dir. (deprecated)

For a detailed guide, see Using SavedModel with Estimators.

Args
`export_dir_base`	A string containing a directory in which to create timestamped subdirectories containing exported `SavedModel`s.
`serving_input_receiver_fn`	A function that takes no argument and returns a `tf.estimator.export.ServingInputReceiver` or `tf.estimator.export.TensorServingInputReceiver`.
`assets_extra`	A dict specifying how to populate the assets.extra directory within the exported `SavedModel`, or `None` if no extra assets are needed.
`as_text`	whether to write the `SavedModel` proto in text format.
`checkpoint_path`	The checkpoint path to export. If `None` (the default), the most recent checkpoint found within the model directory is chosen.
`strip_default_attrs`	Boolean. If `True`, default-valued attributes will be removed from the `NodeDef`s. For a detailed guide, see Stripping Default-Valued Attributes.

Returns
The path to the exported directory as a bytes object.

Raises
`ValueError`	if no `serving_input_receiver_fn` is provided, no `export_outputs` are provided, or no checkpoint can be found.

`get_variable_names`

View source

get_variable_names()

Returns list of all variable names in this model.

Returns
List of names.

Raises
`ValueError`	If the `Estimator` has not produced a checkpoint yet.

`get_variable_value`

View source

get_variable_value(
    name
)

Returns value of the variable given by name.

Args
`name`	string or a list of string, name of the tensor.

Returns
Numpy array - value of the tensor.

Raises
`ValueError`	If the `Estimator` has not produced a checkpoint yet.

`latest_checkpoint`

View source

latest_checkpoint()

Finds the filename of the latest saved checkpoint file in model_dir.

Returns
The full path to the latest checkpoint or `None` if no checkpoint was found.

`predict`

View source

predict(
    input_fn, predict_keys=None, hooks=None, checkpoint_path=None,
    yield_single_examples=True
)

Yields predictions for given features.

Please note that interleaving two predict outputs does not work. See: issue/20506

Args
`input_fn`	A function that constructs the features. Prediction continues until `input_fn` raises an end-of-input exception (`tf.errors.OutOfRangeError` or `StopIteration`). See Premade Estimators for more information. The function should construct and return one of the following: `tf.data.Dataset` object -- Outputs of `Dataset` object must have same constraints as below. features -- A `tf.Tensor` or a dictionary of string feature name to `Tensor`. features are consumed by `model_fn`. They should satisfy the expectation of `model_fn` from inputs. * A tuple, in which case the first item is extracted as features.
`predict_keys`	list of `str`, name of the keys to predict. It is used if the `tf.estimator.EstimatorSpec.predictions` is a `dict`. If `predict_keys` is used then rest of the predictions will be filtered from the dictionary. If `None`, returns all.
`hooks`	List of `tf.train.SessionRunHook` subclass instances. Used for callbacks inside the prediction call.
`checkpoint_path`	Path of a specific checkpoint to predict. If `None`, the latest checkpoint in `model_dir` is used. If there are no checkpoints in `model_dir`, prediction is run with newly initialized `Variables` instead of ones restored from checkpoint.
`yield_single_examples`	If `False`, yields the whole batch as returned by the `model_fn` instead of decomposing the batch into individual elements. This is useful if `model_fn` returns some tensors whose first dimension is not equal to the batch size.

Yields:

Evaluated values of predictions tensors.

Raises
`ValueError`	If batch length of predictions is not the same and `yield_single_examples` is `True`.
`ValueError`	If there is a conflict between `predict_keys` and `predictions`. For example if `predict_keys` is not `None` but `tf.estimator.EstimatorSpec.predictions` is not a `dict`.

`predict_cluster_index`

View source

predict_cluster_index(
    input_fn
)

Finds the index of the closest cluster center to each input point.

Args
`input_fn`	Input points. See `tf.estimator.Estimator.predict`.

Yields:

The index of the closest cluster center for each input point.

`score`

View source

score(
    input_fn
)

Returns the sum of squared distances to nearest clusters.

Note that this function is different from the corresponding one in sklearn which returns the negative sum.

Args
`input_fn`	Input points. See `tf.estimator.Estimator.evaluate`. Only one batch is retrieved.

Returns
The sum of the squared distance from each point in the first batch of inputs to its nearest cluster center.

`train`

View source

train(
    input_fn, hooks=None, steps=None, max_steps=None, saving_listeners=None
)

Trains a model given training data input_fn.

Args
`input_fn`	A function that provides input data for training as minibatches. See Premade Estimators for more information. The function should construct and return one of the following: A `tf.data.Dataset` object: Outputs of `Dataset` object must be a tuple `(features, labels)` with same constraints as below. A tuple `(features, labels)`: Where `features` is a `tf.Tensor` or a dictionary of string feature name to `Tensor` and `labels` is a `Tensor` or a dictionary of string label name to `Tensor`. Both `features` and `labels` are consumed by `model_fn`. They should satisfy the expectation of `model_fn` from inputs.
`hooks`	List of `tf.train.SessionRunHook` subclass instances. Used for callbacks inside the training loop.
`steps`	Number of steps for which to train the model. If `None`, train forever or train until `input_fn` generates the `tf.errors.OutOfRange` error or `StopIteration` exception. `steps` works incrementally. If you call two times `train(steps=10)` then training occurs in total 20 steps. If `OutOfRange` or `StopIteration` occurs in the middle, training stops before 20 steps. If you don't want to have incremental behavior please set `max_steps` instead. If set, `max_steps` must be `None`.
`max_steps`	Number of total steps for which to train model. If `None`, train forever or train until `input_fn` generates the `tf.errors.OutOfRange` error or `StopIteration` exception. If set, `steps` must be `None`. If `OutOfRange` or `StopIteration` occurs in the middle, training stops before `max_steps` steps. Two calls to `train(steps=100)` means 200 training iterations. On the other hand, two calls to `train(max_steps=100)` means that the second call will not do any iteration since first call did all 100 steps.
`saving_listeners`	list of `CheckpointSaverListener` objects. Used for callbacks that run immediately before or after checkpoint savings.

Returns
`self`, for chaining.

Raises
`ValueError`	If both `steps` and `max_steps` are not `None`.
`ValueError`	If either `steps` or `max_steps <= 0`.

`transform`

View source

transform(
    input_fn
)

Transforms each input point to its distances to all cluster centers.

Note that if distance_metric=KMeansClustering.SQUARED_EUCLIDEAN_DISTANCE, this function returns the squared Euclidean distance while the corresponding sklearn function returns the Euclidean distance.

Args
`input_fn`	Input points. See `tf.estimator.Estimator.predict`.

Yields:

The distances from each input point to each cluster center.

Class Variables

ALL_DISTANCES = 'all_distances'
CLUSTER_CENTERS_VAR_NAME = 'clusters'
CLUSTER_INDEX = 'cluster_index'
COSINE_DISTANCE = 'cosine'
KMEANS_PLUS_PLUS_INIT = 'kmeans_plus_plus'
RANDOM_INIT = 'random'
SCORE = 'score'
SQUARED_EUCLIDEAN_DISTANCE = 'squared_euclidean'

tf.compat.v1.estimator.experimental.KMeans

Example:

Args

Raises

Attributes

Methods

cluster_centers

eval_dir

evaluate

experimental_export_all_saved_models

export_saved_model

export_savedmodel

get_variable_names

get_variable_value

latest_checkpoint

predict

Yields:

predict_cluster_index

Yields:

score

train

transform

Yields:

Class Variables

`cluster_centers`

`eval_dir`

`evaluate`

`experimental_export_all_saved_models`

`export_saved_model`

`export_savedmodel`

`get_variable_names`

`get_variable_value`

`latest_checkpoint`

`predict`

`predict_cluster_index`

`score`

`train`

`transform`