tfp.substrates.numpy.distributions.DirichletMultinomial

Dirichlet-Multinomial compound distribution.

Inherits From: AutoCompositeTensorDistribution, Distribution

View aliases

Main aliases

tfp.experimental.substrates.numpy.distributions.DirichletMultinomial

tfp.substrates.numpy.distributions.DirichletMultinomial(
    total_count,
    concentration,
    validate_args=False,
    allow_nan_stats=True,
    name='DirichletMultinomial'
)

The Dirichlet-Multinomial distribution is parameterized by a (batch of) length-K concentration vectors (K > 1) and a total_count number of trials, i.e., the number of trials per draw from the DirichletMultinomial. It is defined over a (batch of) length-K vector counts such that tf.reduce_sum(counts, -1) = total_count. The Dirichlet-Multinomial is identically the Beta-Binomial distribution when K = 2.

Mathematical Details

The Dirichlet-Multinomial is a distribution over K-class counts, i.e., a length-K vector of non-negative integer counts = n = [n_0, ..., n_{K-1}].

The probability mass function (pmf) is,

pmf(n; alpha, N) = Beta(alpha + n) / (prod_j n_j!) / Z
Z = Beta(alpha) / N!

where:

• concentration = alpha = [alpha_0, ..., alpha_{K-1}], alpha_j > 0,
• total_count = N, N a positive integer,
• N! is N factorial, and,
• Beta(x) = prod_j Gamma(x_j) / Gamma(sum_j x_j) is the multivariate beta function, and,
• Gamma is the gamma function.

Dirichlet-Multinomial is a compound distribution, i.e., its samples are generated as follows.

1. Choose class probabilities: probs = [p_0,...,p_{K-1}] ~ Dir(concentration)
2. Draw integers: counts = [n_0,...,n_{K-1}] ~ Multinomial(total_count, probs)

The last concentration dimension parameterizes a single Dirichlet-Multinomial distribution. When calling distribution functions (e.g., dist.prob(counts)), concentration, total_count and counts are broadcast to the same shape. The last dimension of counts corresponds to single Dirichlet-Multinomial distributions.

Distribution parameters are automatically broadcast in all functions; see examples for details.

Pitfalls

The number of classes, K, must not exceed:

• the largest integer representable by self.dtype, i.e., 2**(mantissa_bits+1) (IEE754),
• the maximum Tensor index, i.e., 2**31-1.

In other words,

K <= min(2**31-1, {
  tf.float16: 2**11,
  tf.float32: 2**24,
  tf.float64: 2**53 }[param.dtype])

Note: This condition is validated only when self.validate_args = True.

Examples

alpha = [1., 2., 3.]
n = 2.
dist = DirichletMultinomial(n, alpha)

Creates a 3-class distribution, with the 3rd class is most likely to be drawn. The distribution functions can be evaluated on counts.

# counts same shape as alpha.
counts = [0., 0., 2.]
dist.prob(counts)  # Shape []

# alpha will be broadcast to [[1., 2., 3.], [1., 2., 3.]] to match counts.
counts = [[1., 1., 0.], [1., 0., 1.]]
dist.prob(counts)  # Shape [2]

# alpha will be broadcast to shape [5, 7, 3] to match counts.
counts = [[...]]  # Shape [5, 7, 3]
dist.prob(counts)  # Shape [5, 7]

Creates a 2-batch of 3-class distributions.

alpha = [[1., 2., 3.], [4., 5., 6.]]  # Shape [2, 3]
n = [3., 3.]
dist = DirichletMultinomial(n, alpha)

# counts will be broadcast to [[2., 1., 0.], [2., 1., 0.]] to match alpha.
counts = [2., 1., 0.]
dist.prob(counts)  # Shape [2]

Args
total_count: Non-negative integer-valued tensor, whose dtype is the same as concentration. The shape is broadcastable to [N1,..., Nm] with m >= 0. Defines this as a batch of N1 x ... x Nm different Dirichlet multinomial distributions. Its components should be equal to integer values. concentration: Positive floating point tensor with shape broadcastable to [N1,..., Nm, K] m >= 0. Defines this as a batch of N1 x ... x Nm different K class Dirichlet multinomial distributions. validate_args: Python bool, default False. When True distribution parameters are checked for validity despite possibly degrading runtime performance. When False invalid inputs may silently render incorrect outputs.
allow_nan_stats	Python bool, default True. When True, statistics (e.g., mean, variance) use the value "NaN" to indicate the result is undefined. When False, an exception is raised if one or more of the statistic's batch members are undefined.
name	Python str name prefixed to Ops created by this class.

Attributes
allow_nan_stats	Python bool describing behavior when a stat is undefined. Stats return +/- infinity when it makes sense. E.g., the variance of a Cauchy distribution is infinity. However, sometimes the statistic is undefined, e.g., if a distribution's pdf does not achieve a maximum within the support of the distribution, the mode is undefined. If the mean is undefined, then by definition the variance is undefined. E.g. the mean for Student's T for df = 1 is undefined (no clear way to say it is either + or - infinity), so the variance = E[(X - mean)**2] is also undefined.
batch_shape	Shape of a single sample from a single event index as a TensorShape. May be partially defined or unknown. The batch dimensions are indexes into independent, non-identical parameterizations of this distribution.
concentration	Concentration parameter; expected prior counts for that coordinate.
dtype	The DType of Tensors handled by this Distribution.
event_shape	Shape of a single sample from a single batch as a TensorShape. May be partially defined or unknown.
experimental_shard_axis_names	The list or structure of lists of active shard axis names.
name	Name prepended to all ops created by this Distribution.
parameters	Dictionary of parameters used to instantiate this Distribution.
reparameterization_type	Describes how samples from the distribution are reparameterized. Currently this is one of the static instances tfd.FULLY_REPARAMETERIZED or tfd.NOT_REPARAMETERIZED.
total_count	Number of trials used to construct a sample.
trainable_variables
validate_args	Python bool indicating possibly expensive checks are enabled.
variables

Methods

batch_shape_tensor

View source

batch_shape_tensor(
    name='batch_shape_tensor'
)

Shape of a single sample from a single event index as a 1-D Tensor.

The batch dimensions are indexes into independent, non-identical parameterizations of this distribution.

Args
name	name to give to the op

Returns
batch_shape	Tensor.

cdf

View source

cdf(
    value, name='cdf', **kwargs
)

Cumulative distribution function.

Given random variable X, the cumulative distribution function cdf is:

cdf(x) := P[X <= x]

Args
value	float or double Tensor.
name	Python str prepended to names of ops created by this function.
**kwargs	Named arguments forwarded to subclass implementation.

Returns
cdf	a Tensor of shape sample_shape(x) + self.batch_shape with values of type self.dtype.

compute_total_concentration

View source

compute_total_concentration()

Compute and return the sum of last dim of concentration parameter.

copy

View source

copy(
    **override_parameters_kwargs
)

Creates a deep copy of the distribution.

Note: the copy distribution may continue to depend on the original initialization arguments.

Args
**override_parameters_kwargs	String/value dictionary of initialization arguments to override with new values.

Returns
distribution	A new instance of type(self) initialized from the union of self.parameters and override_parameters_kwargs, i.e., dict(self.parameters, **override_parameters_kwargs).

covariance

View source

covariance(
    name='covariance', **kwargs
)

Covariance.

Covariance is (possibly) defined only for non-scalar-event distributions.

For example, for a length-k, vector-valued distribution, it is calculated as,

Cov[i, j] = Covariance(X_i, X_j) = E[(X_i - E[X_i]) (X_j - E[X_j])]

where Cov is a (batch of) k x k matrix, 0 <= (i, j) < k, and E denotes expectation.

Alternatively, for non-vector, multivariate distributions (e.g., matrix-valued, Wishart), Covariance shall return a (batch of) matrices under some vectorization of the events, i.e.,

Cov[i, j] = Covariance(Vec(X)_i, Vec(X)_j) = [as above]

where Cov is a (batch of) k' x k' matrices, 0 <= (i, j) < k' = reduce_prod(event_shape), and Vec is some function mapping indices of this distribution's event dimensions to indices of a length-k' vector.

Additional documentation from DirichletMultinomial:

The covariance for each batch member is defined as the following:

Var(X_j) = n * alpha_j / alpha_0 * (1 - alpha_j / alpha_0) *
(n + alpha_0) / (1 + alpha_0)

where concentration = alpha and total_concentration = alpha_0 = sum_j alpha_j.

The covariance between elements in a batch is defined as:

Cov(X_i, X_j) = -n * alpha_i * alpha_j / alpha_0 ** 2 *
(n + alpha_0) / (1 + alpha_0)

Args
name	Python str prepended to names of ops created by this function.
**kwargs	Named arguments forwarded to subclass implementation.

Returns
covariance	Floating-point Tensor with shape [B1, ..., Bn, k', k'] where the first n dimensions are batch coordinates and k' = reduce_prod(self.event_shape).

cross_entropy

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cross_entropy(
    other, name='cross_entropy'
)

Computes the (Shannon) cross entropy.

Denote this distribution (self) by P and the other distribution by Q. Assuming P, Q are absolutely continuous with respect to one another and permit densities p(x) dr(x) and q(x) dr(x), (Shannon) cross entropy is defined as:

H[P, Q] = E_p[-log q(X)] = -int_F p(x) log q(x) dr(x)

where F denotes the support of the random variable X ~ P.

Args
other	tfp.distributions.Distribution instance.
name	Python str prepended to names of ops created by this function.

Returns
cross_entropy	self.dtype Tensor with shape [B1, ..., Bn] representing n different calculations of (Shannon) cross entropy.

entropy

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entropy(
    name='entropy', **kwargs
)

Shannon entropy in nats.

event_shape_tensor

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event_shape_tensor(
    name='event_shape_tensor'
)

Shape of a single sample from a single batch as a 1-D int32 Tensor.

Args
name	name to give to the op

Returns
event_shape	Tensor.

experimental_default_event_space_bijector

View source

experimental_default_event_space_bijector(
    *args, **kwargs
)

Bijector mapping the reals (R**n) to the event space of the distribution.

Distributions with continuous support may implement _default_event_space_bijector which returns a subclass of tfp.bijectors.Bijector that maps R**n to the distribution's event space. For example, the default bijector for the Beta distribution is tfp.bijectors.Sigmoid(), which maps the real line to [0, 1], the support of the Beta distribution. The default bijector for the CholeskyLKJ distribution is tfp.bijectors.CorrelationCholesky, which maps R^(k * (k-1) // 2) to the submanifold of k x k lower triangular matrices with ones along the diagonal.

The purpose of experimental_default_event_space_bijector is to enable gradient descent in an unconstrained space for Variational Inference and Hamiltonian Monte Carlo methods. Some effort has been made to choose bijectors such that the tails of the distribution in the unconstrained space are between Gaussian and Exponential.

For distributions with discrete event space, or for which TFP currently lacks a suitable bijector, this function returns None.

Args
*args	Passed to implementation _default_event_space_bijector.
**kwargs	Passed to implementation _default_event_space_bijector.

Returns
event_space_bijector	Bijector instance or None.

experimental_fit

View source

@classmethod
experimental_fit(
    value, sample_ndims=1, validate_args=False, **init_kwargs
)

Instantiates a distribution that maximizes the likelihood of x.

Args
value	a Tensor valid sample from this distribution family.
sample_ndims	Positive int Tensor number of leftmost dimensions of value that index i.i.d. samples. Default value: 1.
validate_args	Python bool, default False. When True, distribution parameters are checked for validity despite possibly degrading runtime performance. When False, invalid inputs may silently render incorrect outputs. Default value: False.
**init_kwargs	Additional keyword arguments passed through to cls.__init__. These take precedence in case of collision with the fitted parameters; for example, tfd.Normal.experimental_fit([1., 1.], scale=20.) returns a Normal distribution with scale=20. rather than the maximum likelihood parameter scale=0..

Returns
maximum_likelihood_instance	instance of cls with parameters that maximize the likelihood of value.

experimental_local_measure

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experimental_local_measure(
    value, backward_compat=False, **kwargs
)

Returns a log probability density together with a TangentSpace.

A TangentSpace allows us to calculate the correct push-forward density when we apply a transformation to a Distribution on a strict submanifold of R^n (typically via a Bijector in the TransformedDistribution subclass). The density correction uses the basis of the tangent space.

Args
value	float or double Tensor.
backward_compat	bool specifying whether to fall back to returning FullSpace as the tangent space, and representing R^n with the standard basis.
**kwargs	Named arguments forwarded to subclass implementation.

Returns
log_prob	a Tensor representing the log probability density, of shape sample_shape(x) + self.batch_shape with values of type self.dtype.
tangent_space	a TangentSpace object (by default FullSpace) representing the tangent space to the manifold at value.

Raises
UnspecifiedTangentSpaceError if backward_compat is False and the _experimental_tangent_space attribute has not been defined.

experimental_sample_and_log_prob

View source

experimental_sample_and_log_prob(
    sample_shape=(), seed=None, name='sample_and_log_prob', **kwargs
)

Samples from this distribution and returns the log density of the sample.

The default implementation simply calls sample and log_prob:

def _sample_and_log_prob(self, sample_shape, seed, **kwargs):
  x = self.sample(sample_shape=sample_shape, seed=seed, **kwargs)
  return x, self.log_prob(x, **kwargs)

However, some subclasses may provide more efficient and/or numerically stable implementations.

Args
sample_shape	integer Tensor desired shape of samples to draw. Default value: ().
seed	PRNG seed; see tfp.random.sanitize_seed for details. Default value: None.
name	name to give to the op. Default value: 'sample_and_log_prob'.
**kwargs	Named arguments forwarded to subclass implementation.

Returns
samples	a Tensor, or structure of Tensors, with prepended dimensions sample_shape.
log_prob	a Tensor of shape sample_shape(x) + self.batch_shape with values of type self.dtype.

is_scalar_batch

View source

is_scalar_batch(
    name='is_scalar_batch'
)

Indicates that batch_shape == [].

Args
name	Python str prepended to names of ops created by this function.

Returns
is_scalar_batch	bool scalar Tensor.

is_scalar_event

View source

is_scalar_event(
    name='is_scalar_event'
)

Indicates that event_shape == [].

Args
name	Python str prepended to names of ops created by this function.

Returns
is_scalar_event	bool scalar Tensor.

kl_divergence

View source

kl_divergence(
    other, name='kl_divergence'
)

Computes the Kullback--Leibler divergence.

Denote this distribution (self) by p and the other distribution by q. Assuming p, q are absolutely continuous with respect to reference measure r, the KL divergence is defined as:

KL[p, q] = E_p[log(p(X)/q(X))]
         = -int_F p(x) log q(x) dr(x) + int_F p(x) log p(x) dr(x)
         = H[p, q] - H[p]

where F denotes the support of the random variable X ~ p, H[., .] denotes (Shannon) cross entropy, and H[.] denotes (Shannon) entropy.

Args
other	tfp.distributions.Distribution instance.
name	Python str prepended to names of ops created by this function.

Returns
kl_divergence	self.dtype Tensor with shape [B1, ..., Bn] representing n different calculations of the Kullback-Leibler divergence.

log_cdf

View source

log_cdf(
    value, name='log_cdf', **kwargs
)

Log cumulative distribution function.

Given random variable X, the cumulative distribution function cdf is:

log_cdf(x) := Log[ P[X <= x] ]

Often, a numerical approximation can be used for log_cdf(x) that yields a more accurate answer than simply taking the logarithm of the cdf when x << -1.

Args
value	float or double Tensor.
name	Python str prepended to names of ops created by this function.
**kwargs	Named arguments forwarded to subclass implementation.

Returns
logcdf	a Tensor of shape sample_shape(x) + self.batch_shape with values of type self.dtype.

log_prob

View source

log_prob(
    value, name='log_prob', **kwargs
)

Log probability density/mass function.

Additional documentation from DirichletMultinomial:

For each batch of counts, value = [n_0, ..., n_{K-1}], P[value] is the probability that after sampling self.total_count draws from this Dirichlet-Multinomial distribution, the number of draws falling in class j is n_j. Since this definition is exchangeable; different sequences have the same counts so the probability includes a combinatorial coefficient.

Note: value must be a non-negative tensor with dtype self.dtype, have no fractional components, and such that tf.reduce_sum(value, -1) = self.total_count. Its shape must be broadcastable with self.concentration and self.total_count.

Args
value	float or double Tensor.
name	Python str prepended to names of ops created by this function.
**kwargs	Named arguments forwarded to subclass implementation.

Returns
log_prob	a Tensor of shape sample_shape(x) + self.batch_shape with values of type self.dtype.

log_survival_function

View source

log_survival_function(
    value, name='log_survival_function', **kwargs
)

Log survival function.

Given random variable X, the survival function is defined:

log_survival_function(x) = Log[ P[X > x] ]
                         = Log[ 1 - P[X <= x] ]
                         = Log[ 1 - cdf(x) ]

Typically, different numerical approximations can be used for the log survival function, which are more accurate than 1 - cdf(x) when x >> 1.

Args
value	float or double Tensor.
name	Python str prepended to names of ops created by this function.
**kwargs	Named arguments forwarded to subclass implementation.

Returns
Tensor of shape sample_shape(x) + self.batch_shape with values of type self.dtype.

mean

View source

mean(
    name='mean', **kwargs
)

Mean.

mode

View source

mode(
    name='mode', **kwargs
)

Mode.

param_shapes

View source

@classmethod
param_shapes(
    sample_shape, name='DistributionParamShapes'
)

Shapes of parameters given the desired shape of a call to sample().

This is a class method that describes what key/value arguments are required to instantiate the given Distribution so that a particular shape is returned for that instance's call to sample().

Subclasses should override class method _param_shapes.

Args
sample_shape	Tensor or python list/tuple. Desired shape of a call to sample().
name	name to prepend ops with.

Returns
dict of parameter name to Tensor shapes.

param_static_shapes

View source

@classmethod
param_static_shapes(
    sample_shape
)

param_shapes with static (i.e. TensorShape) shapes.

This is a class method that describes what key/value arguments are required to instantiate the given Distribution so that a particular shape is returned for that instance's call to sample(). Assumes that the sample's shape is known statically.

Subclasses should override class method _param_shapes to return constant-valued tensors when constant values are fed.

Args
sample_shape	TensorShape or python list/tuple. Desired shape of a call to sample().

Returns
dict of parameter name to TensorShape.

Raises
ValueError	if sample_shape is a TensorShape and is not fully defined.

parameter_properties

View source

@classmethod
parameter_properties(
    dtype=tf.float32, num_classes=None
)

Returns a dict mapping constructor arg names to property annotations.

This dict should include an entry for each of the distribution's Tensor-valued constructor arguments.

Distribution subclasses are not required to implement _parameter_properties, so this method may raise NotImplementedError. Providing a _parameter_properties implementation enables several advanced features, including:

• Distribution batch slicing (sliced_distribution = distribution[i:j]).
• Automatic inference of _batch_shape and _batch_shape_tensor, which must otherwise be computed explicitly.
• Automatic instantiation of the distribution within TFP's internal property tests.
• Automatic construction of 'trainable' instances of the distribution using appropriate bijectors to avoid violating parameter constraints. This enables the distribution family to be used easily as a surrogate posterior in variational inference.

In the future, parameter property annotations may enable additional functionality; for example, returning Distribution instances from tf.vectorized_map.

Args
dtype	Optional float dtype to assume for continuous-valued parameters. Some constraining bijectors require advance knowledge of the dtype because certain constants (e.g., tfb.Softplus.low) must be instantiated with the same dtype as the values to be transformed.
num_classes	Optional int Tensor number of classes to assume when inferring the shape of parameters for categorical-like distributions. Otherwise ignored.

Returns
parameter_properties	A str ->tfp.python.internal.parameter_properties.ParameterPropertiesdict mapping constructor argument names toParameterProperties` instances.

Raises
NotImplementedError	if the distribution class does not implement _parameter_properties.

prob

View source

prob(
    value, name='prob', **kwargs
)

Probability density/mass function.

Additional documentation from DirichletMultinomial:

For each batch of counts, value = [n_0, ..., n_{K-1}], P[value] is the probability that after sampling self.total_count draws from this Dirichlet-Multinomial distribution, the number of draws falling in class j is n_j. Since this definition is exchangeable; different sequences have the same counts so the probability includes a combinatorial coefficient.

Note: value must be a non-negative tensor with dtype self.dtype, have no fractional components, and such that tf.reduce_sum(value, -1) = self.total_count. Its shape must be broadcastable with self.concentration and self.total_count.

Args
value	float or double Tensor.
name	Python str prepended to names of ops created by this function.
**kwargs	Named arguments forwarded to subclass implementation.

Returns
prob	a Tensor of shape sample_shape(x) + self.batch_shape with values of type self.dtype.

quantile

View source

quantile(
    value, name='quantile', **kwargs
)

Quantile function. Aka 'inverse cdf' or 'percent point function'.

Given random variable X and p in [0, 1], the quantile is:

quantile(p) := x such that P[X <= x] == p

Args
value	float or double Tensor.
name	Python str prepended to names of ops created by this function.
**kwargs	Named arguments forwarded to subclass implementation.

Returns
quantile	a Tensor of shape sample_shape(x) + self.batch_shape with values of type self.dtype.

sample

View source

sample(
    sample_shape=(), seed=None, name='sample', **kwargs
)

Generate samples of the specified shape.

Note that a call to sample() without arguments will generate a single sample.

Args
sample_shape	0D or 1D int32 Tensor. Shape of the generated samples.
seed	PRNG seed; see tfp.random.sanitize_seed for details.
name	name to give to the op.
**kwargs	Named arguments forwarded to subclass implementation.

Returns
samples	a Tensor with prepended dimensions sample_shape.

stddev

View source

stddev(
    name='stddev', **kwargs
)

Standard deviation.

Standard deviation is defined as,

stddev = E[(X - E[X])**2]**0.5

where X is the random variable associated with this distribution, E denotes expectation, and stddev.shape = batch_shape + event_shape.

Args
name	Python str prepended to names of ops created by this function.
**kwargs	Named arguments forwarded to subclass implementation.

Returns
stddev	Floating-point Tensor with shape identical to batch_shape + event_shape, i.e., the same shape as self.mean().

survival_function

View source

survival_function(
    value, name='survival_function', **kwargs
)

Survival function.

Given random variable X, the survival function is defined:

survival_function(x) = P[X > x]
                     = 1 - P[X <= x]
                     = 1 - cdf(x).

Args
value	float or double Tensor.
name	Python str prepended to names of ops created by this function.
**kwargs	Named arguments forwarded to subclass implementation.

Returns
Tensor of shape sample_shape(x) + self.batch_shape with values of type self.dtype.

unnormalized_log_prob

View source

unnormalized_log_prob(
    value, name='unnormalized_log_prob', **kwargs
)

Potentially unnormalized log probability density/mass function.

This function is similar to log_prob, but does not require that the return value be normalized. (Normalization here refers to the total integral of probability being one, as it should be by definition for any probability distribution.) This is useful, for example, for distributions where the normalization constant is difficult or expensive to compute. By default, this simply calls log_prob.

Args
value	float or double Tensor.
name	Python str prepended to names of ops created by this function.
**kwargs	Named arguments forwarded to subclass implementation.

Returns
unnormalized_log_prob	a Tensor of shape sample_shape(x) + self.batch_shape with values of type self.dtype.

variance

View source

variance(
    name='variance', **kwargs
)

Variance.

Variance is defined as,

Var = E[(X - E[X])**2]

where X is the random variable associated with this distribution, E denotes expectation, and Var.shape = batch_shape + event_shape.

Args
name	Python str prepended to names of ops created by this function.
**kwargs	Named arguments forwarded to subclass implementation.

Returns
variance	Floating-point Tensor with shape identical to batch_shape + event_shape, i.e., the same shape as self.mean().

__getitem__

View source

__getitem__(
    slices
)

Slices the batch axes of this distribution, returning a new instance.

b = tfd.Bernoulli(logits=tf.zeros([3, 5, 7, 9]))
b.batch_shape  # => [3, 5, 7, 9]
b2 = b[:, tf.newaxis, ..., -2:, 1::2]
b2.batch_shape  # => [3, 1, 5, 2, 4]

x = tf.random.stateless_normal([5, 3, 2, 2])
cov = tf.matmul(x, x, transpose_b=True)
chol = tf.linalg.cholesky(cov)
loc = tf.random.stateless_normal([4, 1, 3, 1])
mvn = tfd.MultivariateNormalTriL(loc, chol)
mvn.batch_shape  # => [4, 5, 3]
mvn.event_shape  # => [2]
mvn2 = mvn[:, 3:, ..., ::-1, tf.newaxis]
mvn2.batch_shape  # => [4, 2, 3, 1]
mvn2.event_shape  # => [2]

Args
slices	slices from the [] operator

Returns
dist	A new tfd.Distribution instance with sliced parameters.

__iter__

View source

__iter__()